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Julius Parulek, Milos Sramek, and Ivan Zahradnik. Geomcell-design of cell geometry. In Nadia Magnenat-Thalmann, Jian J. Zhang, and David D. Feng, editors,
in the book on "Recent Advances in the 3D Physiological Human", pages 21-36, London, 2009. Springer-Verlag.
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Julius Parulek, Milos Sramek, Michal Cervenansky, Marta Novotova and Ivan Zahradnik, A Cell Architecture Modeling System Based
on Quantitative Ultrastructural Characteristics, in the book on "Systems Biology" by Humana Press, Springer Verlag, Series: Methods in Molecular Biology,
Vol. 500, Ivan V. Maly (Ed.), ISBN: 978-1-934115-64-0, pp. 289?313, ? Springer-Verlag Berlin Heidelberg 2009
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R. Durikovic, S. Czanner, J. Parulek, M. Sramek, Heterogeneous Modeling of Biological Organs and Organ Growth,
in the book on "Heterogeneous objects modeling and applications" by Springer Verlag, Series: Lecture Notes in Computer Science ,
Vol. 4889, Pasko, Alexander; Adzhiev, Valery; Comninos, Peter (Eds.) , ISBN: 978-3-540-68441-1, HOMA,
LNCS 4889, pp. 239?258, ? Springer-Verlag Berlin Heidelberg 2008
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Julius Parulek, Marek Ciglan, Branislav Simon, Milos Sramek, Ladislav Hluchy and Ivan Zahradnik:
Metadata in problem solving environment for stereology
based modeling. In 3rd International Workshop on Grid Computing for Complex Problems : GCCP 2007. - Bratislava :
Institute of Informatics SAS, 2007. ISBN 978-80-969202-7-3, p. 126-133.
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Julius Parulek, Marek Ciglan, Branislav Simon, Milos Sramek, Ladislav Hluchy and Ivan Zahradnik:
Grid Problem Solving Environment for Stereology Based Modeling,
In International Conference on Grid computing, high-performAnce and Distributed Applications, OTM 2007, Part II, pages 1417-?1434, Berlin, Heidelberg, 2007. Springer-Verlag.
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Julius Parulek and Milos Sramek: Implicit modeling
by metamorphosis of 2d shapes. In SCCG ?07: Proceedings of the 23nd spring conference on Computer graphics, pages 227?234. Comenius University, Bratislava, April 2007.
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Parulek J, Sramek M., Novotova M., Zahradnik I: Geometric Modeling of Muscle Cells - Computer Aided Generation of Complex Structural Models of Muscle Cells,
GIT Imaging & Microscopy 2, (2006)
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J?lius Parulek, Pavol Novotny, and Milos Sramek:
XISL?a development tool for construction of implicit
surfaces. In SCCG 06: Proceedings of the 22nd
spring conference on Computer graphics, pages 128-
135. Comenius University, Bratislava, April 2006.
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Julius Parulek, Milos Sramek and Ivan Zahradnik: Construction of geometrical models of muscle cells, Workshop on Biophotonics and Molecular Simulations, 2006
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Parulek J, Sramek M, Zahradnik I.
Geometrical Modelling of Muscle Cells Based on Functional Representation of Polygons.
In: Scala V and Scopigno R. WSCG POSTER proceedings, Plzen, Czech Republic: UNION Agency - Science Press, 2004: 121-124.
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I. Zahradnik, J. Parulek, M. Sramek:
GEOMETRICAL MODELING OF THE ULTRASTRUCTURE OF MUSCLE CELLS. In Press. 80. FYZIOLOGICK? DNY. Praha 2004.
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Parulek J, Zahradnik I, Sramek M. A Modelling Tool for Construction of 3D Structure of Muscle Cells.
In: Jan J, Kozumplik and Provaznik I. Analysis of Biomedical Signals and Image proceedings, Brno University of Technology, ISSN 1211-412X, 2004: 267-269
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Parulek J, Sramek M, Zahradnik I. : F-rep for modeling of muscle cels.
Spring Conference On Computer Graphics 2005, Conference Materials and Non-Refereed Posters. ISSN 1335-5694, May 12-14, 2005, Budmerice, Slovakia, p. 37-38
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Parulek J, Zimanyi, M.: Heart Reconstruction from Non-Parallel Slices using Implicit Surfaces.
Spring Conference On Computer Graphics 2005, Conference Materials and Non-Refereed Posters. ISSN 1335-5694, May 12-14, 2005, Budmerice, Slovakia, p. 35-36
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I. Zahradn?k, J. Parulek: Computer modeling of utrastructure of muscle cells.
Dreilandertagung Microscopy Conference Davos 2005, p. 120
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Education:
Work & Research Experience:
- 03/2008-04/2008: researcher at the Commission for Scientific Visualization, Austrian Academy of Sciences
- 08/2003 ? present: research assistant, Institute of Molecular Physiology and Genetics, Slovak Academy of Science
- 10/2006 ? present: research assistant and lecturer at Faculty of Mathematics, Physics and Informatics at Comenius University Bratislava, Slovak Republic
- 07 ? 09/2002: Kelt?s excavation
- 07 ? 09/2001: Kelt?s excavation
- 2002 - 2003: Diploma Thesis in Computer Graphics (Geometrical modelling of muscle cells) for
Institute of Molecular Physiology and Genetics (IMPG), Slovak Academy of Sciences in Bratislava
Academic Interests:
- Implicit surfaces (F-rep, Convolution Surfaces, Distance Surfaces, Analytic surfaces, Precise Contact Modeling, raytracing, polygonization,?)
- CSG modeling (development of geometrical tools, ?)
- Volumetric Data (voxelization, polygonization, visualization,?)
- Image processing and computer vision (miscroscopical images segmentation,?)
- Stereologic and morphometric applications (development of a software application aimed at quantification of electron microscopy images)
- Mathematical based simulations (Aaction potential modeling on myocytes, Ca2+ spark models)
Programming experience::
- Skilled: C, C++, Python, Java, PHP, Pascal, LaTex, HTML, XML, MathML
- Low-level graphics: OpenGL and Direct X programming
- Libraries development: linear algebra, implicit surfaces, GUI modeling applications (wxWidgets)
- IDE experience: Windows (MSVC, CodeBlocks,..), Linux (Eclipse, CodeBlocks)
- Mathematical programming: OriginLab, Mathlab, Mathematica
Other (free time) Interests:
- Books: A. & B.Strugackij, K. Vonnegut, S. King, P. K. Dick, N. Gaiman, H. Sienkiewicz, U. Eco,..
- Sports: Tourist, Tenis, Basketball, Football, Cycling, Joga, Skiing, Tai-chi
- Movies: European, Czech production
- Music: favourite bands (Asia, Dream Theater, Arena, Lacrimosa, Pain of Salvation, Toto, X-Japan,...)
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